rs107978466 SNP Detail

Summary

• ID
  rs107978466
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:138153001 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGATTAGA TGTGAGCAAG
  CCAATTTGGC TAATTCCTGG AAATTCACAT TAGGTCATTG TTTCTCAAAC TTGTAGGTCG
  TGACCCCTTT GAAAGTTGAA TGACTCTTTC ACAGGGGTTA CCTAAGACTA TTGGAAAACA
  CAGATATTTA CATTACTGTT CTTATCAGTA GCAAAAAAAA TACGGTTATG AAGTAGTGAC
  R
  ATAATAACTT TACGGTTGGG GGTCATCACA TGAGAAACTG CATTAAAAGG TCATAGCATG
  AGGAAGGTTG AGAATTTCTG TTTTAGGTTC TACCAGTTCT GTATGATTAA GGGGTCAAAA
  TGGGGAAATC GGGTTCAGTT TATGTCTAAT ATAGGTACTT AAGAAGTACG GAGGGTAAAG
  GAATGTGCTA GGAACTACCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss144538209	ENSMUSSNP4135402	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs107978466					SNP	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:138153001 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16854	CpG island 16854	428 bp proximal
Rr399442	regulatory region 399442	945 bp upstream
Tssr54073	transcription start site region 54073	955 bp downstream
Zfp113	zinc finger protein 113	within coordinates