rs107978500 SNP Detail

Summary

• ID
  rs107978500
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:128550324 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CACCGGGAAA TTATAAAGGC TATTCCAGAT AATTAAGATT
  CATCCTTATA CTTCTGCTCC TCTAGTCAGG TACCAACTTC TGTCTTAGTT TGGGTTATTG
  M
  TGAGAAGACA CCATTACCAA AGCAAGTCTT ATAAAGGCAA ACATTTATTT GGGTCTGGTT
  TACAATTTTA GAGGTTCAGT CCATTATCGT GGTGGGAAG                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147568405	ENSMUSSNP785196	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs107978500					SNP	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:128550324 () rs orientation: forward

Symbol	Name	Function Class
D2Mit305	DNA segment, Chr 2, Massachusetts Institute of Technology 305	704 bp proximal
D2Mit305.1	DNA segment, Chr 2, Massachusetts Institute of Technology 305.1	617 bp proximal
Mertk	MER proto-oncogene tyrosine kinase	within coordinates
Rr58325	regulatory region 58325	924 bp distal
Rr58326	regulatory region 58326	78 bp proximal
Tssr20064	transcription start site region 20064	312 bp upstream
Tssr20065	transcription start site region 20065	352 bp upstream
Tssr20066	transcription start site region 20066	651 bp upstream
Tssr20067	transcription start site region 20067	687 bp upstream