rs107978694 SNP Detail

Summary

• ID
  rs107978694
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:67836476 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T GCTATTATTT GATTAAGTTA TGAATTTTAT TTTTTATTTT
  ATTCCCCCTC TCCCTGATTC TAGGAGGGTG TTCCCCCATC CACCCACCTA CTCCTGCCTC
  C
  CCGCACTGGC ATTCCCCAAC ACTGGGACTA TGAGTCTTCA CAGGATCAAG GGCCTCTCCT
  CCTATTAATA TCCTACAAGA CCATCTTCTG CTACATATGC A                    
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss133267827	ENSMUSSNP3352061	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs107978694					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:67836476 () rs orientation: forward

Symbol	Name	Function Class
Igk	immunoglobulin kappa chain complex	within coordinates
Igkv17-127	immunoglobulin kappa variable 17-127	1667 bp upstream
Rr631684	regulatory region 631684	1252 bp distal
Rr631685	regulatory region 631685	1330 bp distal
Tssr56911	transcription start site region 56911	1638 bp upstream