rs107982594 SNP Detail

Summary

• ID
  rs107982594
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:31277444 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCCTCTGG AGTCCTGGGC
  ACAGTGGGGG GGGGGGGACA CAAAAAGAGA AACTGCGCCC CACGAAACGG AGCCTGCTCT
  CCTGCGCTCC CCAGAGACAG CTACTCTTGG AGGAGGCAGC GAAGTCCCAG GGGAGACAGA
  GGAGGACGAG CTCAGATCCC TGCCAGGGTG AGGGTAGGGT GTGGGCATTT ACACGCCCCC
  M
  TCCCCCCAGA TACCAGTGTT AGGACAAAAC CTGGGTGCTA CAGAATTGCT AGACAAGTAT
  TGTTTCTCAG AGGTGGGCAA GCGTCTCCTC TTCCACGGTC ACTCAATGCT CCAGGAGAAA
  GCTAACATAC AACAACAAAA ACCAGCCCAC CATCTGTCTG GTCTCACCCT TGGCCCTACC
  GGCTCTGTCT AACAAGCGGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss398001326	MGP_WTSI_17_31195415	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	C	A	A	A	A	C	C	A	A	A	A	C	C	A	A	A	A	A	C	C	C	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs107982594					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	C	A	A	A	A	C	C	A	A	A	A	C	C	A	A	A	A	A	C	C	C	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398001326	MGP_WTSI_17_31195415	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:31277444 () rs orientation: forward

Symbol	Name	Function Class
Abcg1	ATP binding cassette subfamily G member 1	within coordinates
Cpgi8940	CpG island 8940	109 bp distal
Gm55872	predicted gene, 55872	1134 bp upstream
Rr525355	regulatory region 525355	733 bp distal
Rr525356	regulatory region 525356	within coordinates
Rr525357	regulatory region 525357	386 bp distal
Rr525358	regulatory region 525358	186 bp distal
Rr525359	regulatory region 525359	1786 bp proximal
Tssr143637	transcription start site region 143637	771 bp downstream
Tssr143638	transcription start site region 143638	757 bp downstream
Tssr143639	transcription start site region 143639	736 bp downstream
Tssr143640	transcription start site region 143640	721 bp downstream
Tssr143641	transcription start site region 143641	692 bp downstream