rs107982750 SNP Detail

Summary

• ID
  rs107982750
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:113876539 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAGTTTGCA TACTAATGAG
  GTAGTTGGAC TTAATACATG AAGAATTAAA TCATGGCTGA GCATTTGATA TTGTAGGACA
  CAGATTATCT TTAATATTTT CCCAAATTGA TCTATGTTTT GATTTTTGTA ATCACTAGTT
  CTGACACTTC CACTTTTCAT AAATAAATAG TTCAAAATGG CAGAAGTACA GTGAGGGCCA
  Y
  TTTGGAAATT TCTGTAAATC CTGTTCTAGT CTCAGGCCAA ATATTCTTCC TTTAATACCT
  TTTAATAATA TAACTGAAAT CAGCAGCTCA GGCAACAACT TTAAAAGTCA AAATTCTAAC
  ATAATACTGA CTAACAATGT ACTAACTTGA TACTCACATG CTGAAAACAG TAAAAAAAAA
  AATACTAAAT TGCGTTTGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss147245676	ENSMUSSNP6897474	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs107982750					SNP	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:113876539 () rs orientation: forward

Symbol	Name	Function Class
Actc1	actin, alpha, cardiac muscle 1	1224 bp downstream
Rr562815	regulatory region 562815	348 bp distal
Rr562816	regulatory region 562816	147 bp proximal
Tssr600	transcription start site region 600	1504 bp downstream
Tssr601	transcription start site region 601	1514 bp downstream
Tssr19429	transcription start site region 19429	1226 bp upstream
Tssr19430	transcription start site region 19430	1321 bp upstream
Tssr19431	transcription start site region 19431	1401 bp upstream
Tssr19432	transcription start site region 19432	1497 bp upstream
Tssr25660	transcription start site region 25660	1253 bp downstream
Tssr25661	transcription start site region 25661	1270 bp downstream
Tssr25662	transcription start site region 25662	1327 bp downstream
Tssr25663	transcription start site region 25663	1390 bp downstream
Tssr25664	transcription start site region 25664	1420 bp downstream
Tssr25665	transcription start site region 25665	1528 bp downstream