rs107983258 SNP Detail

Summary

• ID
  rs107983258
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:17939728 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTAATCTC AGAACTCTAC
  AGGTAGAAAT GTGAAAAGCA GAAATTCATC CTCAGCGTAC AGTGAGCTTC AAGTTGGCCT
  GACCAAGAGG AACAAGGGGG GAAAAAGCTG ATGTCTTTTC TCTCTCTCTC TCTCTCTCTC
  TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTA TTTGTCCTAA TTCTTTTGGT
  W
  GAGAGAAGGA AAGAGATGAA CATGTATTGA GTTCCCTGGT ATCTACCAAA TTTCTATATT
  ACTTGTTGGT TAATATTATA ACAAACATTA AATTGTATTC AGAACCATAT TTGATTACTA
  TCTTTGTGTG CTTTGGATCT CATGACAGTG ATAGTTACCT GAGGTGCTTA ACTACCATTT
  TAGTGACAGT AAACTATTCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	DBA/1J	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss390179797	MGP_WTSI_14_4633084	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	T	T	T	T	A	T	T	T	A	T	T	T	T	A	T	A	T	A	T	T	A	T	A	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	DBA/1J	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs107983258					SNP	T	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	T	T	T	T	A	T	T	T	A	T	T	T	T	A	T	A	T	A	T	T	A	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss390179797	MGP_WTSI_14_4633084	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:17939728 () rs orientation: forward

Symbol	Name	Function Class
Gm17074	predicted gene 17074	738 bp upstream