About   Help   FAQ
rs107983258 SNP Detail
Summary
  • ID
    rs107983258
  • Variation Type
    SNP
  • Alleles
    A/T
Genome Location and Flanking Sequence
  • Location
    Chr14:17939728 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CTGTAATCTC AGAACTCTAC
    AGGTAGAAAT GTGAAAAGCA GAAATTCATC CTCAGCGTAC AGTGAGCTTC AAGTTGGCCT
    GACCAAGAGG AACAAGGGGG GAAAAAGCTG ATGTCTTTTC TCTCTCTCTC TCTCTCTCTC
    TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTA TTTGTCCTAA TTCTTTTGGT
    W
    GAGAGAAGGA AAGAGATGAA CATGTATTGA GTTCCCTGGT ATCTACCAAA TTTCTATATT
    ACTTGTTGGT TAATATTATA ACAAACATTA AATTGTATTC AGAACCATAT TTGATTACTA
    TCTTTGTGTG CTTTGGATCT CATGACAGTG ATAGTTACCT GAGGTGCTTA ACTACCATTT
    TAGTGACAGT AAACTATTCA                                            
    
    W = A/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
DBA/1J
DBA/2J
FVB/NJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss390179797 MGP_WTSI_14_4633084 EVA_MGPV3 EVA_MGPV3 f SNP T T A A A A A A A A A A A A A A A T A A A T T T T A T T T A T T T T A T A T A T T A T A T
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
DBA/1J
DBA/2J
FVB/NJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs107983258 SNP T T A A A A A A A A A A A A A A A T A A A T T T T A T T T A T T T T A T A T A T T A T A T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss390179797 MGP_WTSI_14_4633084 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr14:17939728 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Gm17074 predicted gene 17074 738 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support.
last database update
12/10/2024
MGI 6.24
The Jackson Laboratory