rs107984580 SNP Detail

Summary

• ID
  rs107984580
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172195931 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTCCACAGGA GTGGTTGTGT GGGTGGGTGG GTGGAGGTGT
  GGGAGTGGGT GTGCGTGTAC ATGGACACAC ACGTGTTCAA TGGAGATCAG TAGAGCTCTC
  K
  TCCCTCCCAT TCCTCCTTTC AGCAACCTGT GAACTTCTTT ACTCTTTCTT CTCTGCTACA
  CCTCTTCCCC AAATCACAGA GCTCATTTCA CTGCATTGCA                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	DBA/2J
ss120009828	PARCsnp_1.18992	PARC_SEQ	INBRED	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	DBA/2J
rs107984580					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172195931 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1045	CpG island 1045	565 bp proximal
Cpgi1046	CpG island 1046	1420 bp proximal
Kcnj10	potassium inwardly-rectifying channel, subfamily J, member 10	within coordinates
Rr423550	regulatory region 423550	604 bp proximal