rs107984705 SNP Detail

Summary

• ID
  rs107984705
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:16729510 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGATCAAG TGGGTTTCCC
  TGAGACGATG CAGGAAGGAG CAGGTGCCAC CCTTCGCTCA GGGAACAGGC ATGCCAGCTG
  AGGAGCACCC AGAGGCTGCA GAGAACCAGG GGGCAGAGGC TGCAGCTAAC CAGAGGGCAG
  AGCCTCTAGC TAGTCCAAGG GCAGAGGCTG CAGCTAGTCC AAGGGCAGAG ACTGCAGCTG
  A
  TCCAAGAGTA GAGGCTGTTG CTAGTCCAAG AGCAGAGGCT GCAGCTAGTC CAAGGGCAGA
  GGCTGTAGCT GATCCAAGAG CAGAGGCTGC AGCTAGTCCA AGGGCAGAGG CTGCAGCTAG
  TCCAAGGACT GAGGCTGCAG CTAGTCTCAG GGCAGAGGCT GTTGCTAGTC CCAGGGCAGA
  GGCTGCAGCT AGTCCAAGGG                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss148402213	ENSMUSSNP1745563	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs107984705					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:16729510 () rs orientation: forward

Symbol	Name	Function Class
Ccdc8	coiled-coil domain containing 8	Coding-NonSynonymous
Cpgi18410	CpG island 18410	469 bp distal
Tssr64672	transcription start site region 64672	1773 bp downstream
Tssr64673	transcription start site region 64673	1659 bp downstream
Tssr64674	transcription start site region 64674	1546 bp downstream