rs107985287 SNP Detail

Summary

• ID
  rs107985287
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:56527470 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGCTTGACT CCTGGTGTGA GAAGGTGACA TTCAACTTAG
  ACAATGGAAG CAATGGAAAT GAGTCTGGCC CTGTGGCCTA CCCGAGTCCT TGGGGGAGCT
  K
  TCACTGCCTG TGAGGTGGGA AGCAGAGGGG GCAGTAAGAT AGATGCTTTC TCTGCCAGCC
  ATTCCCACGC CCACCTGGCT GAGTTCTCTC TGGAGTCAA                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss149044542	ENSMUSSNP5528828	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
ss324346594	CHEV_13_56481018	CHEVERUD	SCREENING_POP	f	SNP				T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs107985287					SNP	T	T	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:56527470 () rs orientation: forward

Symbol	Name	Function Class
Rr272828	regulatory region 272828	331 bp proximal
Rr284344	regulatory region 284344	1131 bp proximal