rs107985764 SNP Detail

Summary

• ID
  rs107985764
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:170901459 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCCCAAACTT GGTGCCACAG ATCTGGATCT GTCGGGGCTC
  ACCCCAGGAC CTCAGCTCGG GGCCCGGACT CTCCTACCCT CTGGCGCGGC CTCCCCTGAC
  C
  GGTTCATCCA TCTATCCATG CATCCATGCA TCCATGCATC CATGCATCCA TGCATCCATG
  CATCCATCCA TCCATCCATC CATCCATCCA TCCCTCCAT                       
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss146152457	ENSMUSSNP2738246	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs107985764					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:170901459 () rs orientation: forward

Symbol	Name	Function Class
Gm56232	predicted gene, 56232	1603 bp upstream
n-TDgtc7	nuclear encoded tRNA aspartic acid 7 (anticodon GTC)	826 bp upstream
n-TGgcc13	nuclear encoded tRNA glycine 13 (anticodon GCC)	412 bp upstream
n-TGtcc5	nuclear encoded tRNA glycine 5 (anticodon TCC)	1485 bp upstream
n-TLcag7	nuclear encoded tRNA leucine 7 (anticodon CAG)	189 bp downstream
Rr423203	regulatory region 423203	1201 bp distal
Rr423204	regulatory region 423204	1390 bp distal