rs107987408 SNP Detail

Summary

• ID
  rs107987408
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:22791591 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTAAAGAA GTGGACTTTA
  AAAGTTGTTA AAGCCGGTGA ATTTGTATAG ACCAAAATTT AAACTTCAGT GTGAGCAAAT
  ATCTTACTTC AATTTTCATG CAGCATAAAT GCATAAGTGG GGACCACATG GAGCAAATTT
  ATGAAAGTAA CTGAATATAT ATATATATAT ATATATATAT ATATATATAT ATATATATAT
  R
  TATATGTATA TATGTGTGTG TGTGTGTGTG TGTATGTATG TGTGTGTGTG TGTGTATGTG
  TGTGTGTGTG TGTGTGTATT CAGTTACTAT CAGTAGTCTC TATGGCCATT TACCTAAACA
  CTTAGGATAA AGTAGTAGAA AATTTATAGG CATTCTTTTG ATAAGATACA TTGGCTCCTG
  TGAAATGGAA ACTGTCTAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/10J	C57BR/cdJ	C57L/J	C58/J	CE/J	NZW/LacJ	QSi5/Ianm	RIIIS/J	SPRET/EiJ	ZALENDE/EiJ
ss130534179	NCBIM37_NT_039649_chr17_22709577	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	A	G	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/10J	C57BR/cdJ	C57L/J	C58/J	CE/J	NZW/LacJ	QSi5/Ianm	RIIIS/J	SPRET/EiJ	ZALENDE/EiJ
rs107987408					SNP	G	G	G	G	G	G	G	A	G	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss130534179	NCBIM37_NT_039649_chr17_22709577	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:22791591 () rs orientation: forward

Symbol	Name	Function Class
Rr392416	regulatory region 392416	480 bp upstream
Vmn2r111	vomeronasal 2, receptor 111	within coordinates