rs107989469 SNP Detail

Summary

• ID
  rs107989469
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141152407 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGGAGACT GGCGTCTCTG
  AGCCAGTTGG ATGCCCAGGT TTGTCTCTGA AGCCAGCGCT GCCTCAGCGG CTCTCAGACT
  CTCCCCTCTG TGTACTGGGG ACACTTCCCC CCCATTCCAC CTCTCCTGAG CCACATGCCC
  TGCTTCGCCC TAACTGCAGA TGGTGGCCAC AAGAAGAACC CCAAACCAGA TCTCTTCTGG
  Y
  CCCCAAATTC AGGGCAAAAA CCCTTGTCAG CCTTAACCCT GGGGGACCTG GGCTCTGACT
  CAGTCTCTGC GTGTAGAATC GGGTGTAAAG GGGGAAGCTC ACTGCTAATC GGGGTCCCAG
  GGGCCTCTAC AGTCTTAGGA CCCTGTGGAG GAGGGGGTGG GGTGGGGTCG TGGGAGTCTA
  GTCTATAACC TGTACACAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147736209	ENSMUSSNP4800154	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs107989469					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141152407 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15228	CpG island 15228	740 bp proximal
Gm70191	predicted gene, 70191	within coordinates
Hspb7	heat shock protein family, member 7 (cardiovascular)	within coordinates
Rr603759	regulatory region 603759	within coordinates
Rr603760	regulatory region 603760	207 bp proximal
Rr603761	regulatory region 603761	1198 bp proximal
Rr603762	regulatory region 603762	1708 bp proximal
Tssr40063	transcription start site region 40063	1087 bp downstream
Tssr40064	transcription start site region 40064	1026 bp downstream
Tssr40065	transcription start site region 40065	999 bp downstream
Tssr40066	transcription start site region 40066	895 bp downstream
Tssr40067	transcription start site region 40067	841 bp downstream
Tssr40068	transcription start site region 40068	786 bp downstream
Tssr40069	transcription start site region 40069	659 bp downstream
Tssr40070	transcription start site region 40070	565 bp downstream
Tssr40071	transcription start site region 40071	548 bp downstream
Tssr40072	transcription start site region 40072	503 bp downstream
Tssr40073	transcription start site region 40073	478 bp downstream
Tssr40074	transcription start site region 40074	451 bp downstream
Tssr40075	transcription start site region 40075	427 bp downstream
Tssr40076	transcription start site region 40076	411 bp downstream
Tssr40077	transcription start site region 40077	391 bp downstream
Tssr40078	transcription start site region 40078	1313 bp upstream
Tssr44315	transcription start site region 44315	1022 bp upstream
Tssr44316	transcription start site region 44316	924 bp upstream
Tssr44317	transcription start site region 44317	896 bp upstream
Tssr44318	transcription start site region 44318	496 bp upstream
Tssr44319	transcription start site region 44319	472 bp downstream