rs107989877 SNP Detail

Summary

• ID
  rs107989877
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:110366310 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTCCCAGA ATCTACTCGG
  TGACGTATAA CACTCATAAC TCCAGTTCTA GGGGAGACAA TGCCCTCTTT TGACTTCCTC
  ATGCACCAAA TACACAGGTA TGCACAGACA TATATGGGAA CAAAAGGTTC ATGCACATAA
  ATAAATCTAA AAAAAATTAA GGTTCAGCAA ACTAGCTAGC TTTTTGTTTC TGTTTCTGTT
  K
  GTTTGTTTTT CTGTTAGACA GGGTTTCTTT GTATAACAGA GCCCTGGCTG TCCTGGACTT
  GCTTTGTAGA CCAGGCCGGT CTCAAACTCA AAGATAGCTG TATGCTGCTT GAGTGCTGGG
  ATCAAAGGCA TGGACCACCA AGCCTGGCCT AGCAAACTAG TTTAATCACG GTTCTTTCAC
  CAAGCCGATC ATGGGCAACT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145647294	ENSMUSSNP185302	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs107989877					SNP	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:110366310 () rs orientation: forward

Symbol	Name	Function Class
Ampd3	adenosine monophosphate deaminase 3	1103 bp upstream
B430319F04Rik	RIKEN cDNA B430319F04 gene	within coordinates
Cpgi19579	CpG island 19579	980 bp proximal
Rr653308	regulatory region 653308	690 bp proximal
Rr653309	regulatory region 653309	1318 bp proximal
Rr653310	regulatory region 653310	1819 bp proximal
Tssr68503	transcription start site region 68503	960 bp upstream
Tssr68504	transcription start site region 68504	1003 bp upstream
Tssr68505	transcription start site region 68505	1035 bp upstream
Tssr68506	transcription start site region 68506	1066 bp upstream
Tssr68507	transcription start site region 68507	1512 bp upstream
Tssr68508	transcription start site region 68508	1727 bp upstream