rs107998082 SNP Detail

Summary

• ID
  rs107998082
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:4230104 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAAGC TTTCCAGGAC TCTGAGCTTG
  A
  CTGGCGTCTC CTGCCCAACG CTCTC                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss139175480	ENSMUSSNP5339575	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	A/J
rs107998082					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:4230104 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6187	CpG island 6187	19 bp proximal
Gm62505	predicted gene, 62505	within coordinates
Nr1d2	nuclear receptor subfamily 1, group D, member 2	465 bp upstream
Rr487195	regulatory region 487195	within coordinates
Rr487196	regulatory region 487196	352 bp proximal
Rr487197	regulatory region 487197	476 bp proximal
Rr487198	regulatory region 487198	1057 bp proximal
Rr487199	regulatory region 487199	1463 bp proximal
Tssr127524	transcription start site region 127524	556 bp upstream
Tssr127525	transcription start site region 127525	494 bp upstream