rs107998333 SNP Detail

Summary

• ID
  rs107998333
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:85342635 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    tagggtatc agacattgtc tctagcttcc
  attcccatgc acatatgaca tatatacata tgaccatgaa ttcacataga taaaaataaC
  TCTTAAAAAG ttagcatata cattagcata tacatatata tatatatata tatatatata
  Y
  acacacatat atatttgtat gtgtataGGA TGTCATACTA CTCAGCAGTT CAATGAACTA
  CTAGTCCATT TTTGCAgctg gagagatggc tcagctgtca aagcactggc tgctcttcca
  gagtacctgg atccaagcct cagcatccca                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325484644	CHEV_17_85434547	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs107998333					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:85342635 () rs orientation: forward

Symbol	Name	Function Class
Rr343448	regulatory region 343448	635 bp distal
Slc3a1	solute carrier family 3, member 1	within coordinates
Tssr146077	transcription start site region 146077	1572 bp downstream