rs107998543 SNP Detail

Summary

• ID
  rs107998543
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172036120 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCTT TCATGCTCCC ATCTTGTATA
  Y
  GTTTACTCCC ACCTGAGCCT GTCCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	DBA/2J	LG/J	SM/J
ss120007400	PARCsnp_1.17778	PARC_SEQ	INBRED	f	SNP	T	C
ss120010304	PARCsnp_1.07419	PARC_SEQ	INBRED	f	SNP	T	C
ss320123228	CHEV_1_174138684	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	DBA/2J	LG/J	SM/J
rs107998543					SNP	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172036120 () rs orientation: forward

Symbol	Name	Function Class
Casq1	calsequestrin 1	1341 bp downstream
Cpgi1038	CpG island 1038	1600 bp distal
Gm17224	predicted gene 17224	within coordinates
Pea15a	proliferation and apoptosis adaptor protein 15A	1822 bp upstream
Rr396578	regulatory region 396578	1013 bp downstream
Rr423485	regulatory region 423485	1760 bp distal
Rr423486	regulatory region 423486	1259 bp distal
Tssr294	transcription start site region 294	1920 bp upstream
Tssr295	transcription start site region 295	1870 bp upstream
Tssr296	transcription start site region 296	1794 bp upstream
Tssr297	transcription start site region 297	1760 bp upstream
Tssr10179	transcription start site region 10179	1770 bp upstream
Tssr15164	transcription start site region 15164	1888 bp upstream
Tssr15165	transcription start site region 15165	1798 bp upstream
Tssr15166	transcription start site region 15166	1767 bp upstream
Tssr15167	transcription start site region 15167	847 bp upstream
Tssr15168	transcription start site region 15168	1553 bp downstream
Tssr15169	transcription start site region 15169	1640 bp downstream
Tssr15170	transcription start site region 15170	1667 bp downstream
Tssr15171	transcription start site region 15171	1681 bp downstream
Tssr15172	transcription start site region 15172	1763 bp downstream
Tssr15173	transcription start site region 15173	1855 bp downstream
Tssr15174	transcription start site region 15174	1907 bp downstream