rs108000327 SNP Detail

Summary

• ID
  rs108000327
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:171808683 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AATACAACTC AAGACCTAGG GATGGCACTG CCCACAGTCG
  GCTAGGTCCT CCCAAATCAA TTATTAACCA AGAAAATTCC CTACAAGCCA ATCTGATGGA
  Y
  TCCTCAGTTG AGGAATTCAA CTCCCTCCAT TTCCAGGTGA CTCTAGATTG TGTCAAGCTG
  ACAAAAACTA ACCAACTCAC CACGCTTCAT TTTACCAACA                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	DBA/2J
ss120005033	PARCsnp_1.16594	PARC_SEQ	INBRED	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	DBA/2J
rs108000327					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171808683 () rs orientation: forward

Symbol	Name	Function Class
Rr396575	regulatory region 396575	1155 bp upstream
Rr423419	regulatory region 423419	212 bp distal
Rr423420	regulatory region 423420	986 bp proximal