rs108001982 SNP Detail

Summary

• ID
  rs108001982
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:145289677 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G ACATATTTTT TGGCATAAGT ACAATATGGG AAAAACTAAA
  AGTCACCACA ATGGTAAACA AGTAGCCCTG CCATTTGAAA GGTGTCCATG AGCACAGAAC
  C
  CTGTTCTTTA AAGCCAGACC CCCAGGTCTG GGCTTGTGCT TCTGAGCTCT CACTTCCATG
  CTTAGCTAGA ATCCATTTTA ACCTCTCACA GTCATCACAA C                    
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147866115	ENSMUSSNP7247002	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs108001982					SNP	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:145289677 () rs orientation: forward

Symbol	Name	Function Class
Gm70447	predicted gene, 70447	1498 bp upstream
Rr97125	regulatory region 97125	1352 bp proximal
Tssr40222	transcription start site region 40222	1507 bp upstream