rs108002680 SNP Detail

Summary

• ID
  rs108002680
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:79152438 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CACCATATGT ATATAGTGCC CACAAAGGCC AAAAGAAGTT
  ATCAGATCTC CTGAGGGTAG AGTTTCAGAC AGTTGTGAGC TGCCATGTGG GTGCTCAGAA
  Y
  CAAACACTGG TACTCTGGAA GAGGAACCTC TGTTCTTAAC TACTGAGCCA TCTCTCATAA
  ATGTAAACAT TTTCATGAAA CTTTCTGCCA TTCTAAGAT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss139802728	ENSMUSSNP1707389	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs108002680					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:79152438 () rs orientation: forward

Symbol	Name	Function Class
Rr293691	regulatory region 293691	637 bp distal
Rr293692	regulatory region 293692	within coordinates
Rr300514	regulatory region 300514	1763 bp proximal
Rr369884	regulatory region 369884	496 bp downstream
Vwa8	von Willebrand factor A domain containing 8	within coordinates