rs108003017 SNP Detail

Summary

• ID
  rs108003017
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:48037867 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGGGCGGG GCAGGGGGGC
  GGCATGCTTG CCCAGGCTGG GAGTCAGGGG CTGGGCTAGC TCCTGGGTGT ATAAAAGGAA
  GGAGTCCCGC TCAGCTCTCC ACTCCACCGC AACGGTCGAG CTCGAAGTGA TTTCTTCCAG
  TGAGACCAGC TGCAAACCGG CATCATGAAG TGGATGGTGG TCGCCTTGCT CTGCCTCCCA
  Y
  TCCTGGAGGC AGCTTTGATC AGGTGAGACT GGAGAATGGC TCTAGGCTCG GAGACCCTCA
  GGCGGGAACC TGGACTCTGG TGCCTATGAA GGTGTCAGAT CCCCTGGGAC AGGCATTACA
  ACAGGTTGTG GGTGCTGAGA CTCGAACCCT GCACTTCTGG GAAAGCAAAC TGTGCTCTTA
  AACCACGGAG CCATGCCTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss398352887	MGP_WTSI_17_47863891	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs108003017					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398352887	MGP_WTSI_17_47863891	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:48037867 () rs orientation: forward

Symbol	Name	Function Class
D17Mit201	DNA segment, Chr 17, Massachusetts Institute of Technology 201	269 bp proximal
Pgc	progastricsin (pepsinogen C)	within coordinates
Tssr5147	transcription start site region 5147	1808 bp upstream
Tssr145003	transcription start site region 145003	94 bp downstream
Tssr145004	transcription start site region 145004	1790 bp upstream
Tssr145005	transcription start site region 145005	1818 bp upstream
Tssr145006	transcription start site region 145006	1827 bp upstream
Tssr145007	transcription start site region 145007	1854 bp upstream
Tssr145008	transcription start site region 145008	1888 bp upstream
Tssr145009	transcription start site region 145009	1905 bp upstream
Tssr148459	transcription start site region 148459	1854 bp downstream
Tssr148460	transcription start site region 148460	1875 bp downstream
Tssr148461	transcription start site region 148461	1914 bp downstream
Tssr148462	transcription start site region 148462	1933 bp downstream