rs108004406 SNP Detail

Summary

• ID
  rs108004406
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:56917453 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGTGCCGC AGGAGGGGTT
  AGCGGCCAAG TGGACATCAT GTAGATCCCT GTTCGGTTGC AAGGTGAGCT TGAGCAGATG
  TGCACCATGG ATGCATGGAT GCCTTGTAAT TGTCTATGGA GACCTATTGT CCTAATTACT
  TCTCAGTTGT CCTGACAAAG CACCATGGCC AAGGCAACTC AATAGAAGGA AAAGTTTTCT
  R
  CTTCCAGTTT CAGAGGACCA TGACCATCGT AACGCGGAGC ATGACAGCAG GCAAACCGGG
  ATGGCGCTGG AGCAGCAGCT GAGAGCTTAC ATTGTGGCTC ATAAGCTGAA AGAGACTACA
  GGGTATTGTG TGGGCTTTTG AAACCTTAAA GTCCACACCA CTGTCACCCC TGCCCCAAGA
  AAACTTATCT CCTAATCCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss398561011	MGP_WTSI_17_56749876	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs108004406					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398561011	MGP_WTSI_17_56749876	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:56917453 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9367	CpG island 9367	154 bp distal
Gm56912	predicted gene, 56912	within coordinates
Micos13	mitochondrial contact site and cristae organizing system subunit 13	682 bp upstream
Rr340044	regulatory region 340044	within coordinates
Rr340045	regulatory region 340045	1147 bp proximal
Rr370299	regulatory region 370299	510 bp downstream
Tssr145313	transcription start site region 145313	537 bp downstream
Tssr148822	transcription start site region 148822	767 bp upstream
Tssr148823	transcription start site region 148823	738 bp upstream
Tssr148824	transcription start site region 148824	634 bp upstream
Tssr148825	transcription start site region 148825	619 bp upstream
Tssr148826	transcription start site region 148826	514 bp upstream
Tssr148827	transcription start site region 148827	482 bp upstream
Tssr148828	transcription start site region 148828	448 bp upstream