rs108004731 SNP Detail

Summary

• ID
  rs108004731
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:110366305 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTCCATTC CCAGAATCTA
  CTCGGTGACG TATAACACTC ATAACTCCAG TTCTAGGGGA GACAATGCCC TCTTTTGACT
  TCCTCATGCA CCAAATACAC AGGTATGCAC AGACATATAT GGGAACAAAA GGTTCATGCA
  CATAAATAAA TCTAAAAAAA ATTAAGGTTC AGCAAACTAG CTAGCTTTTT GTTTCTGTTT
  Y
  TGTTTGTTTG TTTTTCTGTT AGACAGGGTT TCTTTGTATA ACAGAGCCCT GGCTGTCCTG
  GACTTGCTTT GTAGACCAGG CCGGTCTCAA ACTCAAAGAT AGCTGTATGC TGCTTGAGTG
  CTGGGATCAA AGGCATGGAC CACCAAGCCT GGCCTAGCAA ACTAGTTTAA TCACGGTTCT
  TTCACCAAGC CGATCATGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145647292	ENSMUSSNP5787619	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	C
ss322398761	CHEV_7_117910612	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs108004731					SNP	C	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:110366305 () rs orientation: forward

Symbol	Name	Function Class
Ampd3	adenosine monophosphate deaminase 3	1108 bp upstream
B430319F04Rik	RIKEN cDNA B430319F04 gene	Noncoding-Transcript-Variant
Cpgi19579	CpG island 19579	985 bp proximal
Rr653308	regulatory region 653308	695 bp proximal
Rr653309	regulatory region 653309	1323 bp proximal
Rr653310	regulatory region 653310	1824 bp proximal
Tssr68503	transcription start site region 68503	965 bp upstream
Tssr68504	transcription start site region 68504	1008 bp upstream
Tssr68505	transcription start site region 68505	1040 bp upstream
Tssr68506	transcription start site region 68506	1071 bp upstream
Tssr68507	transcription start site region 68507	1517 bp upstream
Tssr68508	transcription start site region 68508	1732 bp upstream