rs108004827 SNP Detail

Summary

• ID
  rs108004827
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:97724492 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G AGTTTGAGGC CAGCCTGGTC TACAGTGTGA GTTCTAGGAT
  AGCCAGGGCT ACACAGAGAA ACCCTGTCTC AAAACCAAAA GACATGTTTA ATTAATGATG
  Y
  GTACTAGAAC ATTCATAGCA ATGGTATTTT TTAATAGTCT CATAACTTTA AAACGAAGTC
  AGATAACTTT GTTGACTCAG ATTCCATTTT AACCTTCTTA T                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	MSM/Ms
ss134252165	ENSMUSSNP5070072	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	MSM/Ms
rs108004827					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:97724492 () rs orientation: forward

Symbol	Name	Function Class
Ophn1	oligophrenin 1	within coordinates
Rr5052	regulatory region 5052	1709 bp proximal
Rr8080	regulatory region 8080	1861 bp proximal