rs108016486 SNP Detail

Summary

• ID
  rs108016486
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:85921350 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCCTGTTC CCCTACCCTG
  GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GATCCGGAAT TCCCACCCCT CCCCACACTC
  GGGCGCGGGT GGTCAGTCTT TGGCCGACGG GGTGAGGTGA GGGGTAAGGT GGCTTCTCTG
  TGTGCGATGG GTCCCGCACG ACCAACACAG GGTGGGGGGC ACTACCTGTG TAGGACGAGA
  R
  GGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG
  AGAATTGAGA TTGTGCGCCC CCGAGCGCGC GTCTGCTCTA TGCGCGCATT AGGGACATTT
  TTGGACTTTT CTCTCGGACG CCCCGGATCT CTTGCCTTTG CCTTTCTTTG GTTCCCCTCC
  CTCCTCTTTT GGCCTCCTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss131350511	NCBIM37_NT_039649_chr17_86013262	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs108016486					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss131350511	NCBIM37_NT_039649_chr17_86013262	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:85921350 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9587	CpG island 9587	850 bp distal
Cpgi9588	CpG island 9588	within coordinates
Cpgi9589	CpG island 9589	757 bp proximal
Gm55782	predicted gene, 55782	318 bp downstream
Gm55783	predicted gene, 55783	740 bp upstream
Gm55784	predicted gene, 55784	1038 bp upstream
Rr340291	regulatory region 340291	within coordinates
Six3	sine oculis-related homeobox 3	within coordinates
Six3os1	SIX homeobox 3, opposite strand 1	within coordinates
Tssr146084	transcription start site region 146084	684 bp downstream
Tssr146085	transcription start site region 146085	437 bp downstream
Tssr149705	transcription start site region 149705	1545 bp upstream
Tssr149706	transcription start site region 149706	858 bp upstream
Tssr149707	transcription start site region 149707	880 bp downstream
Tssr149708	transcription start site region 149708	1078 bp downstream
Tssr149709	transcription start site region 149709	1125 bp downstream
Tssr149710	transcription start site region 149710	1214 bp downstream
Tssr149711	transcription start site region 149711	1242 bp downstream
Tssr149712	transcription start site region 149712	1532 bp downstream