rs108021449 SNP Detail

Summary

• ID
  rs108021449
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:90916903 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATAT ACAGAGCGCC GAAGAAGGGC
  R
  AGAATCATTC AACTTCAAAA AAAAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147290208	ENSMUSSNP3223451	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss323387265	CHEV_10_90543786	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs108021449					SNP	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:90916903 () rs orientation: forward

Symbol	Name	Function Class
Apaf1	apoptotic peptidase activating factor 1	within coordinates
Cpgi2099	CpG island 2099	1142 bp proximal
Ikbip	IKBKB interacting protein	1899 bp upstream
Rr402144	regulatory region 402144	1813 bp upstream
Rr436975	regulatory region 436975	1256 bp distal
Rr436976	regulatory region 436976	694 bp proximal
Rr436977	regulatory region 436977	1378 bp proximal
Tssr95222	transcription start site region 95222	1050 bp upstream
Tssr95223	transcription start site region 95223	1983 bp upstream
Tssr95224	transcription start site region 95224	1995 bp upstream
Tssr98900	transcription start site region 98900	1515 bp downstream
Tssr98901	transcription start site region 98901	1612 bp downstream
Tssr98902	transcription start site region 98902	1642 bp downstream
Tssr98903	transcription start site region 98903	1663 bp downstream
Tssr98904	transcription start site region 98904	1742 bp downstream