rs108022194 SNP Detail

Summary

• ID
  rs108022194
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:96241336 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T CTTCCCCCAG CCGACTTTTC ATTTTCAGCT TTGAGGCCTA
  GTTTCCCACC AATTTGCTTG TGGCTCTGAG GTTTTTTTGT TTTTGGTTTT TTTTTTTTTT
  K
  TTTTTTTTTT TGTTGTTTTT TGCCTCCTTC CTCTAGTAAA TCACAATATT CTAAAATTGA
  GCCCATCATA GGTGCCTCAC CATAGAATAC ATTACATTTT T                    
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss132677018	ENSMUSSNP2758470	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs108022194					SNP	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:96241336 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3656	CpG island 3656	1502 bp proximal
Hoxb2	homeobox B2	1122 bp upstream
Hoxb3os	homeobox B3 and homeobox B2, opposite strand	within coordinates
Rr141	regulatory region 141	62 bp distal
Rr454	regulatory region 454	290 bp distal
Rr455383	regulatory region 455383	435 bp distal
Rr455384	regulatory region 455384	42 bp distal
Rr455385	regulatory region 455385	631 bp proximal
Tssr104519	transcription start site region 104519	1086 bp upstream
Tssr104520	transcription start site region 104520	1359 bp upstream
Tssr104521	transcription start site region 104521	1388 bp upstream
Tssr104522	transcription start site region 104522	1440 bp upstream
Tssr104523	transcription start site region 104523	1464 bp upstream
Tssr104524	transcription start site region 104524	1544 bp upstream
Tssr104525	transcription start site region 104525	1610 bp upstream
Tssr110331	transcription start site region 110331	383 bp upstream
Tssr110332	transcription start site region 110332	311 bp upstream