rs108024466 SNP Detail

Summary

• ID
  rs108024466
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:48038786 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCACGCAGG TGGCTCTGCA
  GAGACCCTTG GGCAATGGCA GCCCACTTGG ATCACGCTCA TGGTGCCATT GGCAGAAGCC
  ATGACCCCTA TGCTCTAACT CTGGAGTTCA CAAGTCACTT CCCTGTGGAC TGTTCCACGA
  GGCACAGTGA TGTCCCTGGG TTGTAAAGTT ATCAATAAGT AGGGGGATCA GCACGATTCC
  Y
  CTTCTTCCAC ACTCTGTCCC GTCGGTTGGT TGGTACTTGG TGCCAGAGGA CCACCATAGG
  AAAGGACACT TTGGGGTGAA CCTGCTTTCT CTGGCACCTT TAAAAAAGTG TAGCACCATG
  GACTGGGATG TGGCTCAGTT GGTAGGATAC TTGCCTAGCA TGTATGATGC TCTGGCTTTG
  ACCCTCAGCA CTCTAGAAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss398352909	MGP_WTSI_17_47864810	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs108024466					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398352909	MGP_WTSI_17_47864810	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:48038786 () rs orientation: forward

Symbol	Name	Function Class
D17Mit201	DNA segment, Chr 17, Massachusetts Institute of Technology 201	526 bp distal
Pgc	progastricsin (pepsinogen C)	within coordinates
Tssr5147	transcription start site region 5147	889 bp upstream
Tssr5148	transcription start site region 5148	1449 bp downstream
Tssr145003	transcription start site region 145003	1013 bp downstream
Tssr145004	transcription start site region 145004	871 bp upstream
Tssr145005	transcription start site region 145005	899 bp upstream
Tssr145006	transcription start site region 145006	908 bp upstream
Tssr145007	transcription start site region 145007	935 bp upstream
Tssr145008	transcription start site region 145008	969 bp upstream
Tssr145009	transcription start site region 145009	986 bp upstream
Tssr145010	transcription start site region 145010	1389 bp upstream
Tssr145011	transcription start site region 145011	1402 bp upstream
Tssr145012	transcription start site region 145012	1414 bp upstream
Tssr145013	transcription start site region 145013	1433 bp upstream
Tssr148459	transcription start site region 148459	935 bp downstream
Tssr148460	transcription start site region 148460	956 bp downstream
Tssr148461	transcription start site region 148461	995 bp downstream
Tssr148462	transcription start site region 148462	1014 bp downstream
Tssr148463	transcription start site region 148463	1417 bp downstream
Tssr148464	transcription start site region 148464	1495 bp downstream