rs108024917 SNP Detail

Summary

• ID
  rs108024917
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:27936905 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACCTCTAAG GGAAAGGGCC
  TCGACCCAAT GAGCAAGCAC AGAATCCTCC AAAATTCCAA AGAGGAAAAA AACAAGCAAA
  ACAAAAGAAA AACCCCAAGC CATCACCAGC ATCAACAGCC AAAGACAGCA ACAGTGCTGT
  CGTGTGAAGC ACAGGGGGGC CAGGACTCAG GGTCAGAAGG CAGGACAATC TGGGAGAGTC
  Y
  CTTCTCTCCT CCCATGCTGC TCCACATGGG GGGAGGGGAG AGGCAGACTG ACTGATGCAA
  ATTCAAGGCT AGCCCAGTTT ACCGTGTCTC ACCTGACTTC CAGATGTCCA GGTGGGCATG
  CAGTACATCC CCACCCAAGG GTGCACGCTG ACGGAACTGT TCCTCGGACA TGGCGCACAG
  CTCCTTACCG CCCAGCTCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325349182	CHEV_17_27854876	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs108024917					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:27936905 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8855	CpG island 8855	543 bp distal
Spdef	SAM pointed domain containing ets transcription factor	within coordinates