rs108025143 SNP Detail

Summary

• ID
  rs108025143
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:147978627 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCTGACAT AGTGGAAACT
  CAATAGAAGT AGAAACTATT TTATAAACCT TATATTATTT TTTAATTTAG GTTGGTTCTT
  TCTACATTTT AATTTACTTG TAATTCATTC TTTATACTCC ATATTCCATT CCCAGCTCAC
  CCTATCCACC CTGCAAATGC TCCTCCACCT CCCACACCTC CTCCCCACCC CATTCTGTCT
  M
  CACTTGAATG CCCCCATCCC CCAGCACACC TGACCTCTAA ACTCCCTGGA GCCTCCAGTC
  TCTTGAGGGT TAGGTGCATC ATCTCTGAAT GAACACAGAC CTGGAAGTCC TCTAGTGGAT
  ATGTGTTGGG GGCCTCATAT CAGATAGTGT ATGCTGCATG TTTGGTGGTC CAGTGTTTGA
  AAGATCTTGG GGTCCAGATT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss136057920	ENSMUSSNP4759366	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C	C
ss321014843	CHEV_3_147935955	CHEVERUD	SCREENING_POP	f	SNP				C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs108025143					SNP	A	C	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:147978627 () rs orientation: forward

Symbol	Name	Function Class
Rr375892	regulatory region 375892	972 bp upstream
Rr587183	regulatory region 587183	525 bp distal
Rr587184	regulatory region 587184	223 bp distal