rs108025273 SNP Detail

Summary

• ID
  rs108025273
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:88372750 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTGCGGCG GCGGCTGTTG
  CTGAGGCGGC TGCGGCGGCG GCTGCTGCGG GGGCTGCTGC TGCTGCTGTT GCACCGGGCG
  CGGCCGCGAC ACTCGCCTGG GTCTCCGGTT GGCGGCTCGG ACGGAGTTCA TTTGCCGGGC
  TGAGGTGGCG GCGTTGGCGG AGGGACACAC ACACTCACGC GCACACGCAC CGCGAGCTCC
  S
  GGGCCGGGGA GGAAGGGGGT GGGGAGCGGG AAGGAGCGGG GCGGCCGGGG ACGCGGGGAC
  CGGGGGGCCA CCGGGCGTGA GCTTCCCCCG GCTCCGCGGG GAGGCTGGGG GCACCACCGG
  AGCTTGAGCG AGGCCCGCCG GCCGGGCCTG GCGCACGGGC AAGGCCGAGG CCGCCGGGCG
  GGGCGGCCGC GAGGGACGCA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss399379367	MGP_WTSI_17_88464662	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	G	G	C	C	G	G	C	G	G	G	G	C	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	C	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs108025273					SNP	C	C	G	G	C	C	G	G	C	G	G	G	G	C	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	C	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss399379367	MGP_WTSI_17_88464662	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:88372750 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9636	CpG island 9636	within coordinates
Fbxo11	F-box protein 11	31 bp upstream
Rr340317	regulatory region 340317	within coordinates
Rr370332	regulatory region 370332	1156 bp upstream
Rr405528	regulatory region 405528	777 bp upstream
Tssr146222	transcription start site region 146222	521 bp downstream
Tssr146223	transcription start site region 146223	493 bp downstream
Tssr149795	transcription start site region 149795	316 bp downstream
Tssr149796	transcription start site region 149796	449 bp downstream
Tssr149797	transcription start site region 149797	530 bp downstream
Tssr149798	transcription start site region 149798	660 bp downstream
Tssr149799	transcription start site region 149799	682 bp downstream