rs108026718 SNP Detail

Summary

• ID
  rs108026718
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:80204542 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAAACTTTG GAGGGCATCA
  TTCCAGATGG GCTTTGGTTG AACTGTCTGG GGATTAAGTC ACCTGTTCTC TATCTTTGGA
  GACACAGATT GTGAGTTCCT TCTGCACTAA CTCTGTGTGC TGCTCCCATG TTTCCTGAGC
  AACCTAGTAA GGGACTTGCT TGATAGTAGG TGTGCTTGCT TGCTTGCTTT TCTTTTCTTT
  C
  CTTTCCTTTT CTTTTCTTTT CTTTTCTTTT CTTTTCTTTT TTCTTCTCTT TTTGTTTGGT
  GGTGGTGGTT TTTCAAGACA TAGTTTCTCT GTATAAACCT CTGTATAAGC CTTGGCTATC
  CTGGAACCCA TTTTACAGAC AAGGCTGGCC TCAAATTCAC AGAGCTTGCC TACCCCTGCC
  TCTTGAGCGC TGGGATTAAA                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss131246190	NCBIM37_NT_039649_chr17_80296453	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs108026718					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss131246190	NCBIM37_NT_039649_chr17_80296453	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:80204542 () rs orientation: forward

Symbol	Name	Function Class
Atl2	atlastin GTPase 2	990 bp upstream
Cpgi9524	CpG island 9524	605 bp distal
Gm41625	predicted gene, 41625	325 bp downstream
Rr340218	regulatory region 340218	341 bp distal
Rr343143	regulatory region 343143	1259 bp proximal
Rr343144	regulatory region 343144	1859 bp proximal
Rr405462	regulatory region 405462	865 bp downstream
Tssr149462	transcription start site region 149462	1147 bp upstream
Tssr149463	transcription start site region 149463	1094 bp upstream
Tssr149464	transcription start site region 149464	1052 bp upstream