rs108029796 SNP Detail

Summary

• ID
  rs108029796
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:124195394 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A AAAATGGAAA AAAAAAAAAA ATCCTTGGCC CGGGCGCAGG
  CTGATGGCAT CAGCAAGTCA GGTCGCCGCG TGGAGGCCGT GCGCGCATGC GCAGTGACTT
  Y
  CCCCGGCCAC GGGCTCGCAT GCGCTGGGGG TGTGCGCCGG CTTGGGGTCC CGATGCGTAT
  GCGCGTTGGG TTTCTGTTGC AGGCAGCGCA CATGCGCATT G                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss134041022	ENSMUSSNP7171979	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs108029796					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:124195394 () rs orientation: forward

Symbol	Name	Function Class
4930526I15Rik	RIKEN cDNA 4930526I15 gene	within coordinates
Ppp2r3d	protein phosphatase 2 (formerly 2A), regulatory subunit B'', delta	18 bp upstream
Rr689518	regulatory region 689518	1473 bp distal
Rr689519	regulatory region 689519	within coordinates
Rr689520	regulatory region 689520	396 bp proximal
Rr689521	regulatory region 689521	512 bp proximal
Rr689522	regulatory region 689522	1413 bp proximal
Tssr3090	transcription start site region 3090	1808 bp upstream
Tssr3091	transcription start site region 3091	1325 bp downstream
Tssr3092	transcription start site region 3092	1297 bp downstream
Tssr3093	transcription start site region 3093	1277 bp downstream
Tssr3094	transcription start site region 3094	1225 bp upstream
Tssr3095	transcription start site region 3095	1024 bp upstream
Tssr3096	transcription start site region 3096	944 bp upstream
Tssr3097	transcription start site region 3097	868 bp upstream
Tssr3098	transcription start site region 3098	517 bp upstream
Tssr3099	transcription start site region 3099	414 bp upstream
Tssr3100	transcription start site region 3100	389 bp upstream
Tssr3101	transcription start site region 3101	277 bp upstream
Tssr3102	transcription start site region 3102	134 bp upstream
Tssr3103	transcription start site region 3103	92 bp upstream
Tssr3104	transcription start site region 3104	within coordinates
Tssr3105	transcription start site region 3105	39 bp downstream