rs108033363 SNP Detail

Summary

• ID
  rs108033363
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:79888185 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G CAAAGGGCCC AGTGCTGGGC TGAGAGCTGT GGGGGCTGGA
  CAAGGCCATA GGTGAAGTTG CAGGAGGAAC TGTTGGGCCT TCAGCTTCTC ACTTAGGCCC
  Y
  TAAGACCTGT GGCTTCTTTG ATGTAGGCAG GGACCTCTGA GGACAATAGT AACTATTTAT
  ATGTCTCTTG CCACCTTGCT TTCCTGACAC AGGGTTCACT G                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147179054	ENSMUSSNP2418300	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs108033363					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:79888185 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1840	CpG island 1840	899 bp proximal
Gm65896	predicted gene, 65896	831 bp downstream
Gpx4	glutathione peroxidase 4	within coordinates
Rr384983	regulatory region 384983	within coordinates
Rr402035	regulatory region 402035	952 bp upstream
Rr435055	regulatory region 435055	354 bp distal
Rr435056	regulatory region 435056	65 bp proximal
Rr435057	regulatory region 435057	647 bp proximal
Rr435058	regulatory region 435058	1619 bp proximal
Rr435059	regulatory region 435059	1834 bp proximal
Tssr94472	transcription start site region 94472	836 bp upstream
Tssr94473	transcription start site region 94473	1208 bp upstream
Tssr94474	transcription start site region 94474	1272 bp upstream
Tssr94475	transcription start site region 94475	1615 bp upstream
Tssr94476	transcription start site region 94476	1646 bp upstream
Tssr94477	transcription start site region 94477	1678 bp upstream
Tssr94478	transcription start site region 94478	1695 bp upstream
Tssr98381	transcription start site region 98381	1008 bp downstream