rs108034007 SNP Detail

Summary

• ID
  rs108034007
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:10295577 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CCACAGTGG GTCTCAGTTC TACCAGTACT
  CTAGAGACCA GGAGATGTAA ACAGCCAGGT GTTTCCTCTG TCTCCCTAAA CATGCTTATT
  ATTACCAGAG AGATGTCTCC CTAAACAAGC TTATTATTAC CAGAGAGACA GCTTACTCAG
  R
  ATGATTATCA ACTGAACAGA GTGTAATTTG GCTTCAGAGC CAACAGTTCC GTGGTTTCAC
  AAGTCAGATG GTAAAATCAC AATTCTCAAG TACTTTAGTG CTTGGAGATG CTCAGATCTC
  CTACCCAGTT AAGCTAGGCC CAGGACCTGG                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	MSM/Ms	SM/J
ss147830284	ENSMUSSNP2272466	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		A
ss321472803	CHEV_5_10245610	CHEVERUD	SCREENING_POP	f	SNP		A		G
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	MSM/Ms	SM/J
rs108034007					SNP	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:10295577 () rs orientation: forward

Symbol	Name	Function Class
Speer1c	spermatogenesis associated glutamate (E)-rich protein 1C	within coordinates