rs108034449 SNP Detail

Summary

• ID
  rs108034449
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:31425748 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACTCA GGATGGCAAT GAACTGCAAG
  Y
  AAGCAAGAGC ATGGGTGAAT CCCAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss145458064	ENSMUSSNP5068726	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss325358913	CHEV_17_31343719	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs108034449					SNP	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:31425748 () rs orientation: forward

Symbol	Name	Function Class
Rr339574	regulatory region 339574	652 bp proximal
Rr370213	regulatory region 370213	1617 bp downstream
Rr370214	regulatory region 370214	1047 bp upstream
Tssr143654	transcription start site region 143654	1275 bp upstream
Ubash3a	ubiquitin associated and SH3 domain containing, A	1099 bp upstream