rs108037673 SNP Detail

Summary

• ID
  rs108037673
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:122523738 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGCGGGAGGG AGGCGGCCCG GGCGGACTCG GGGACCCGGG
  GACCCGGAGC ACCCCAGAGG CCAGTTCTTC CTGGTCTCGA GCCAAACGCC GGGAGGCCGC
  Y
  GCGGAGGGCG TGGAGAAGGG AGCCTGTCCT TTAGGATCCG ACTGCTGCAC GGGCAGTCGG
  GGCTCGCGCA GACTTGAGAG TGGAGCGGAG GGACGAGAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	LG/J	SM/J
ss135748507	ENSMUSSNP857765	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss320914170	CHEV_3_122433007	CHEVERUD	SCREENING_POP	f	SNP		T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	LG/J	SM/J
rs108037673					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:122523738 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13771	CpG island 13771	within coordinates
Pde5a	phosphodiesterase 5A, cGMP-specific	within coordinates
Rr584392	regulatory region 584392	1132 bp distal
Rr584393	regulatory region 584393	1146 bp distal
Rr584394	regulatory region 584394	509 bp distal
Rr584395	regulatory region 584395	within coordinates
Rr584396	regulatory region 584396	373 bp proximal
Tssr31509	transcription start site region 31509	1094 bp downstream
Tssr31510	transcription start site region 31510	1074 bp downstream
Tssr31511	transcription start site region 31511	955 bp downstream
Tssr31512	transcription start site region 31512	907 bp downstream
Tssr31513	transcription start site region 31513	856 bp downstream
Tssr31514	transcription start site region 31514	354 bp downstream
Tssr31515	transcription start site region 31515	220 bp downstream
Tssr31516	transcription start site region 31516	195 bp downstream
Tssr31517	transcription start site region 31517	160 bp downstream
Tssr31518	transcription start site region 31518	32 bp downstream
Tssr31519	transcription start site region 31519	24 bp upstream
Tssr31520	transcription start site region 31520	47 bp upstream
Tssr31521	transcription start site region 31521	127 bp upstream
Tssr31522	transcription start site region 31522	163 bp upstream