rs108038849 SNP Detail

Summary

• ID
  rs108038849
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:57388901 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCGGTGTAG TGACCCTTGG
  CCCAGTTGTT GCCTGCTCCG GATTGACCTG GGGAAGCGAC AGCGTTGAAT TCGCAGGCAT
  GGAGAAGGGG TGGACTCTCC AACCCATCCA TCTGCACTGC ACCCTGGTAT CTGAATCATT
  AGACTAGAAA ATGATAAGAG TACCTGGCTG GGCTCCATGG ATGGAGCACT GCCTAGCACG
  S
  AGGAGGCCTA GAGTTCTAAC CTGGCCACAA CAGAAACCAG ATGTGTTGGC CACACTCTTA
  CTGCAGTACT TAGGCGGTAG CAGCTGTAGG ACCAGGCATT TAAGACTAGC TACAGTTACA
  TGATGAGTTG GAGGCCAGCC TGTGCTACAT GAGATTCAGT AGTTAATAGA TAACAATGAA
  AAGACTGGAA GAATAATGCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss398570166	MGP_WTSI_17_57221324	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	C	G	G	G	G	C	G	C	G	G	G	C	G	G	G	G	G	G	C	G	G	G	G	G	G	G	C	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs108038849					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	C	G	G	G	G	C	G	C	G	G	G	C	G	G	G	G	G	G	C	G	G	G	G	G	G	G	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398570166	MGP_WTSI_17_57221324	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:57388901 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9393	CpG island 9393	61 bp distal
Gm56907	predicted gene, 56907	within coordinates
Rr529268	regulatory region 529268	1618 bp distal
Tssr5182	transcription start site region 5182	1657 bp downstream
Tssr145372	transcription start site region 145372	1616 bp downstream
Tssr145373	transcription start site region 145373	1296 bp downstream
Tssr145374	transcription start site region 145374	1180 bp downstream
Tssr148882	transcription start site region 148882	1486 bp upstream
Tssr148883	transcription start site region 148883	1393 bp upstream
Tssr148884	transcription start site region 148884	1324 bp upstream
Tssr148885	transcription start site region 148885	1276 bp upstream
Tssr148886	transcription start site region 148886	1255 bp upstream
Tssr148887	transcription start site region 148887	1239 bp upstream
Tssr148888	transcription start site region 148888	1196 bp upstream
Tssr148889	transcription start site region 148889	1172 bp upstream
Tssr148890	transcription start site region 148890	1071 bp upstream
Tssr148891	transcription start site region 148891	951 bp upstream
Tssr148892	transcription start site region 148892	932 bp upstream
Tssr148893	transcription start site region 148893	719 bp upstream
Tssr148894	transcription start site region 148894	647 bp upstream
Tssr148895	transcription start site region 148895	243 bp upstream
Tssr148896	transcription start site region 148896	176 bp upstream
Tubb4a	tubulin, beta 4A class IVA	within coordinates