rs108047542 SNP Detail

Summary

• ID
  rs108047542
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:182820163 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C AGAAAGTCTC ATAAATCCTT TGCCAATTTA GCAAAGAGTC
  CTGTGGCAAC CAAAAGTAAA GCTGGCCATG TAAGGGTGGC ACAAAGGAAA AGGTCACCCC
  Y
  GAGCAGCCTT GAATTACAAC ACTCACAAAC TAAACGCCCT CGTTTGACCT TGACCCTGGT
  TGATATTGAG AGTCTTCTCT TCCCATATTC TCAGGGGCCC A                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss136165866	ENSMUSSNP5580017	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs108047542					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:182820163 () rs orientation: forward

Symbol	Name	Function Class
Rr425028	regulatory region 425028	768 bp distal
Rr425029	regulatory region 425029	1370 bp distal
Rr425030	regulatory region 425030	280 bp distal