rs108047678 SNP Detail

Summary

• ID
  rs108047678
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:77159297 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GACATCACAT ATAAATATTA CTGTGGGTTT TTCTGTTATT
  TTGTGTTCCT AGGTGGAAAG CCCCCTTATC TATAAATAGG AATTTTAGGT GCCTTCTGTC
  Y
  TTTTGTTTTG GTTTTTGGTT TTTTTTTGTT TTTTTGTTTT TTTGCTATAA CATAAGATTT
  TTCAGTTCAT TGTTTAATGG CACAGTGGTA GCTTACAGA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148392331	ENSMUSSNP551332	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss325255226	CHEV_16_77362654	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs108047678					SNP	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:77159297 () rs orientation: forward

Symbol	Name	Function Class
D16Mit217	DNA Segment, Chr 16 Massachusetts Institute of Technology 217	983 bp distal
Mir99ahg	Mir99a and Mirlet7c-1 host gene (non-protein coding)	within coordinates
Tssr139060	transcription start site region 139060	883 bp downstream
Tssr139061	transcription start site region 139061	32 bp upstream