rs108048800 SNP Detail

Summary

• ID
  rs108048800
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:31275914 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCCACTTCT GTGTTTGCTA
  GGCCCCAGCA TAGTCTCACA AGGAGGTTTG TACTCATAAC CTTCTAGAAT GCCCTGGCTT
  TGTCAGCCTT CTTGATACCA GATAGGGCCA TCGGTCCCTC CGGTATTAGA AGCCCACCCT
  CTTCCCTCCA AACTCAGCCA CACCCACTTT TCTTTCTGTG ATGCTAGGGA GAAGCTTAGC
  Y
  GAGGTCAAGG ATCTGAGGAT GTGACAACCA CTTGCCTGCC CCTTTCTAGG AGAGCAGAAA
  GTACCCCAGC ACACCCAAGT GTTGGAGCGG GTGGCTCTAC TGTGCTGGGG GTGACAGAGA
  ATCATTTCAA CAGAAGACTT AGTTTAGGAT CTGAGGTTGG GATTAAAGAT TTTCACCACG
  GTTACCACGC AACGTCCCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss398001289	MGP_WTSI_17_31193885	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	C	T	T	T	T	C	C	T	T	T	T	T	C	C	C	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs108048800					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	C	T	T	T	T	C	C	T	T	T	T	T	C	C	C	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398001289	MGP_WTSI_17_31193885	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:31275914 () rs orientation: forward

Symbol	Name	Function Class
Abcg1	ATP binding cassette subfamily G member 1	754 bp upstream
Cpgi8940	CpG island 8940	325 bp proximal
Rr525355	regulatory region 525355	257 bp proximal
Rr525356	regulatory region 525356	798 bp proximal
Rr525357	regulatory region 525357	1123 bp proximal
Rr525358	regulatory region 525358	1323 bp proximal
Tssr143637	transcription start site region 143637	746 bp upstream
Tssr143638	transcription start site region 143638	764 bp upstream
Tssr143639	transcription start site region 143639	779 bp upstream
Tssr143640	transcription start site region 143640	800 bp upstream
Tssr143641	transcription start site region 143641	828 bp upstream