rs108048881 SNP Detail

Summary

• ID
  rs108048881
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:136721324 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGAATAGGT AAGCTCTGTC
  CAGTAAGAGA TCTTGTCTCA ATACTGTAAC TAAAAAATGG CCCAGCCAGT AAAAGATGCT
  TGCTGCCAAG TCTAATGACC TGAATTCAAT ATTCAGTCTC TCTGATCCCT CACATGATGA
  AAGGAGACAA CCAACACCTG AAATCTGTCG TCTAACTTAC ACACGGACAC ACGGACACAC
  A
  GACACACACA CACACTATGG GCCAGATATT AGGGATAATA GGCAGCTCAA AGAGAGATTT
  GGGGTGGGGA AAGAACCCAC ATGAGTGGAC AGGGAGCTCT GAGATCCTGT CTAGAAACAA
  GTACTGCAGG GGCTGAGAGA GTATGCTAGG AATATTCTGG AAGCTTTTAG CAGCTGGACA
  ACAAGACTAG GTCTCATCAG                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss144517253	ENSMUSSNP3886864	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs108048881					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:136721324 () rs orientation: forward

Symbol	Name	Function Class
Gm71524	predicted gene, 71524	530 bp downstream
Myl10	myosin, light chain 10, regulatory	676 bp upstream
Rr127468	regulatory region 127468	324 bp distal
Rr127469	regulatory region 127469	477 bp proximal
Tssr49256	transcription start site region 49256	941 bp downstream
Tssr49257	transcription start site region 49257	350 bp upstream
Tssr49258	transcription start site region 49258	486 bp upstream
Tssr49259	transcription start site region 49259	549 bp upstream
Tssr49260	transcription start site region 49260	614 bp upstream
Tssr49261	transcription start site region 49261	1126 bp upstream
Tssr49262	transcription start site region 49262	1144 bp upstream
Tssr49263	transcription start site region 49263	1187 bp upstream
Tssr49264	transcription start site region 49264	1197 bp upstream
Tssr49265	transcription start site region 49265	1651 bp upstream
Tssr49266	transcription start site region 49266	1673 bp upstream
Tssr49267	transcription start site region 49267	1743 bp upstream