rs108054113 SNP Detail

Summary

• ID
  rs108054113
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:26750771 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACAA ACGCTCTTCA CCCTGTTGTA
  R
  CATCAGCTTG GTGGTATTTT CACCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325342254	CHEV_17_26668742	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs108054113					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:26750771 () rs orientation: forward

Symbol	Name	Function Class
Gm34606	predicted gene, 34606	within coordinates
Tssr143239	transcription start site region 143239	11 bp upstream
Tssr143240	transcription start site region 143240	1082 bp upstream
Tssr143241	transcription start site region 143241	1098 bp upstream
Tssr143242	transcription start site region 143242	1112 bp upstream
Tssr143243	transcription start site region 143243	1137 bp upstream
Tssr143244	transcription start site region 143244	1168 bp upstream
Tssr146959	transcription start site region 146959	100 bp upstream
Tssr146960	transcription start site region 146960	817 bp downstream
Tssr146961	transcription start site region 146961	840 bp downstream
Tssr146962	transcription start site region 146962	868 bp downstream
Tssr146963	transcription start site region 146963	913 bp downstream