rs108054947 SNP Detail

Summary

• ID
  rs108054947
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:124194457 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C CCTCATTTGC ATATTTATGA GAGGAACCGA ATGCTGTGGT
  GTAATTATTG CTTCGGCCGG TCCGGTCCGA GCCGAGCCGG TCCGAGCCGA GGCCGCCCAG
  T
  CCGCTCGGAG CTGAAAACCG GAACCCGGTG GTGGTGGGGG AGGGGCGAGA GGAAGGGGGA
  GGGATATAGG CGACGGGGGC GGGGCGATAG GGCAGGGCCA A                    
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss134041058	ENSMUSSNP4850081	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs108054947					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:124194457 () rs orientation: forward

Symbol	Name	Function Class
4930526I15Rik	RIKEN cDNA 4930526I15 gene	668 bp downstream
Gm20783	predicted gene, 20783	1936 bp downstream
Ppp2r3d	protein phosphatase 2 (formerly 2A), regulatory subunit B'', delta	955 bp upstream
Rr689518	regulatory region 689518	536 bp distal
Rr689519	regulatory region 689519	465 bp proximal
Rr689520	regulatory region 689520	1333 bp proximal
Rr689521	regulatory region 689521	1449 bp proximal
Tssr3095	transcription start site region 3095	1961 bp upstream
Tssr3096	transcription start site region 3096	1881 bp upstream
Tssr3097	transcription start site region 3097	1805 bp upstream
Tssr3098	transcription start site region 3098	1454 bp upstream
Tssr3099	transcription start site region 3099	1351 bp upstream
Tssr3100	transcription start site region 3100	1326 bp upstream
Tssr3101	transcription start site region 3101	1214 bp upstream
Tssr3102	transcription start site region 3102	1071 bp upstream
Tssr3103	transcription start site region 3103	1029 bp upstream
Tssr3104	transcription start site region 3104	937 bp upstream
Tssr3105	transcription start site region 3105	827 bp upstream