rs108056150 SNP Detail

Summary

• ID
  rs108056150
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:113876542 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTGCATAC TAATGAGGTA
  GTTGGACTTA ATACATGAAG AATTAAATCA TGGCTGAGCA TTTGATATTG TAGGACACAG
  ATTATCTTTA ATATTTTCCC AAATTGATCT ATGTTTTGAT TTTTGTAATC ACTAGTTCTG
  ACACTTCCAC TTTTCATAAA TAAATAGTTC AAAATGGCAG AAGTACAGTG AGGGCCATTT
  Y
  GGAAATTTCT GTAAATCCTG TTCTAGTCTC AGGCCAAATA TTCTTCCTTT AATACCTTTT
  AATAATATAA CTGAAATCAG CAGCTCAGGC AACAACTTTA AAAGTCAAAA TTCTAACATA
  ATACTGACTA ACAATGTACT AACTTGATAC TCACATGCTG AAAACAGTAA AAAAAAAAAT
  ACTAAATTGC GTTTGAAAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss147245683	ENSMUSSNP5468733	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs108056150					SNP	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:113876542 () rs orientation: forward

Symbol	Name	Function Class
Actc1	actin, alpha, cardiac muscle 1	1221 bp downstream
Rr562815	regulatory region 562815	351 bp distal
Rr562816	regulatory region 562816	144 bp proximal
Tssr600	transcription start site region 600	1501 bp downstream
Tssr601	transcription start site region 601	1511 bp downstream
Tssr19429	transcription start site region 19429	1223 bp upstream
Tssr19430	transcription start site region 19430	1318 bp upstream
Tssr19431	transcription start site region 19431	1398 bp upstream
Tssr19432	transcription start site region 19432	1494 bp upstream
Tssr25660	transcription start site region 25660	1250 bp downstream
Tssr25661	transcription start site region 25661	1267 bp downstream
Tssr25662	transcription start site region 25662	1324 bp downstream
Tssr25663	transcription start site region 25663	1387 bp downstream
Tssr25664	transcription start site region 25664	1417 bp downstream
Tssr25665	transcription start site region 25665	1525 bp downstream