rs108057650 SNP Detail

Summary

• ID
  rs108057650
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:52140820 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAACCAGAA GGAGATGCTT
  AAGCCACTGT CCAAGTCTCT TCTCCCACCC TGACCCACCC AAAAGCAGGG GCAAAGAGGT
  CAAGAAATGC GGATTTCGTA GGAGGGGAGG CTGGGCCCAG GGACCTTTTC AACTGGTGAA
  GCTCCAAAGA ACTCTGAAAG GTCAAAGTAG CTGAAGGCTT GGACCCCCAA GCTAGGGAGA
  R
  ATTGGACTCT ATCAACTTTA ACCCACTCCC CTGCTACTCC TTCCCCACAC AACCCCCAGC
  TCTAAGGAAG CTATCAACTA ACAGGTCTTT TGTTTCCTGT TGTGTCGCCT TTGGGAAATT
  TGCATTGAAC GTGACGATAG AAAATTACTA CTGTTTACTC GAAGTTAAGG GGGTTGCAGA
  ACGAAAACAG TTTTTACTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss398453337	MGP_WTSI_17_51973117	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs108057650					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398453337	MGP_WTSI_17_51973117	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:52140820 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9312	CpG island 9312	161 bp distal
Gm6934	predicted gene 6934	within coordinates
Rr370288	regulatory region 370288	400 bp downstream
Rr528751	regulatory region 528751	1131 bp distal
Rr528752	regulatory region 528752	630 bp distal
Rr528753	regulatory region 528753	810 bp distal
Rr528754	regulatory region 528754	12 bp distal
Satb1	special AT-rich sequence binding protein 1	502 bp upstream
Tssr145166	transcription start site region 145166	1015 bp downstream
Tssr145167	transcription start site region 145167	992 bp downstream
Tssr145168	transcription start site region 145168	967 bp downstream
Tssr145169	transcription start site region 145169	775 bp downstream
Tssr145170	transcription start site region 145170	755 bp downstream
Tssr145171	transcription start site region 145171	531 bp downstream
Tssr145172	transcription start site region 145172	670 bp upstream
Tssr148679	transcription start site region 148679	1897 bp upstream
Tssr148680	transcription start site region 148680	1159 bp upstream
Tssr148681	transcription start site region 148681	1138 bp upstream
Tssr148682	transcription start site region 148682	1114 bp upstream
Tssr148683	transcription start site region 148683	1095 bp upstream
Tssr148684	transcription start site region 148684	689 bp upstream
Tssr148685	transcription start site region 148685	654 bp upstream
Tssr148686	transcription start site region 148686	546 bp upstream
Tssr148687	transcription start site region 148687	522 bp upstream
Tssr148688	transcription start site region 148688	493 bp upstream