rs108057944 SNP Detail

Summary

• ID
  rs108057944
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:73144111 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCCACTCG TCCAGGGTCC
  TGGCCGGGCC ACCAGGGCAA TTCTCAGGAC TGTGGGGCCG TGGGGCCGCG GGGCCGGGCC
  GGGCGGTCCT TCTTTGTGAG GCTGTGGCGC GGCGGCCGCC GCCGACCCGC CCCCGCCGCG
  CAGCGGAGCG CTCCGCGAGC CCACAACAGC CGCGACCCCC TTAGCGACCC GCGGCCCCCG
  C
  CCGCCCGCCG CCCTCGGCGC CTGTCGCCTG GGCCGCCGGT CCGCAGACAG CTCTCTCCGT
  GACACCCCCA CTTCCTAGGC CGCCCCGCCC CCACAGCCGC CGTCCCCGCC GCAGCGTCGG
  GGGCGCGCCC GGGCTCCGAT TCGGGGCCGG CCCGCGGGCC CGCGCTCCAG GGCCGCGCTC
  GCACCCCGCC CGCCCCGCCG                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss131135772	NCBIM37_NT_039649_chr17_73186456	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs108057944					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss131135772	NCBIM37_NT_039649_chr17_73186456	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:73144111 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9486	CpG island 9486	within coordinates
Rr340175	regulatory region 340175	within coordinates
Rr405431	regulatory region 405431	560 bp downstream
Tssr5197	transcription start site region 5197	961 bp upstream
Tssr145775	transcription start site region 145775	457 bp downstream
Tssr145776	transcription start site region 145776	399 bp downstream
Tssr145777	transcription start site region 145777	366 bp downstream
Tssr145778	transcription start site region 145778	437 bp upstream
Tssr145779	transcription start site region 145779	508 bp upstream
Tssr145780	transcription start site region 145780	928 bp upstream
Tssr149306	transcription start site region 149306	353 bp downstream
Ypel5	yippee like 5	within coordinates