rs108058240 SNP Detail

Summary

• ID
  rs108058240
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:83573687 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C AAAAGTACAC AAGTAATAGG ACAGTGAGCA CTGCGTGCCC
  CCCCCTTCTT AGATGATATT TTACAGTCCC CAGGATACAT TTTTTTTTTT TTTTTTTTTT
  T
  GGTTTTTTGA GACAGGGTTT CTCTGTGTAG TCCTGGATGT CCTGGAACTC ACTCTGTAGA
  CCAGGCTGGC CTCGAACTCA GAAATCTGCC TGCCTCTGCC T                    
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss137926855	ENSMUSSNP7005832	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs108058240					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:83573687 () rs orientation: forward

Symbol	Name	Function Class
Dcaf4	DDB1 and CUL4 associated factor 4	within coordinates
Rr261746	regulatory region 261746	314 bp proximal
Rr264518	regulatory region 264518	1647 bp proximal
Rr265648	regulatory region 265648	486 bp distal
Rr268609	regulatory region 268609	915 bp proximal
Rr387528	regulatory region 387528	12 bp upstream
Tssr114259	transcription start site region 114259	844 bp downstream