rs108062313 SNP Detail

Summary

• ID
  rs108062313
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:171019706 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACACTTACAA AAAAATGACT TGGAGAGCCG GAGAGAAGGT
  TCAGTGGTTA AGAGCACTGA CTGCTCTTCC AGAGGTCCTG AGTTCAGTTC CACATGGTGG
  Y
  TCACAATTAC CTGTAATGGG ATCTGATGCA CTCTACTGGT GTGTCTGAAG ACAGCTACAG
  TATGCTCATA AAAATAAATC TTTTTTTTTT AATGACTTG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	DBA/2J	LG/J	SM/J
ss119995989	PARCsnp_1.12072	PARC_SEQ	INBRED	f	SNP	T	C
ss119997594	PARCsnp_1.01066	PARC_SEQ	INBRED	f	SNP	T	C
ss320117008	CHEV_1_173122268	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	DBA/2J	LG/J	SM/J
rs108062313					SNP	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171019706 () rs orientation: forward

Symbol	Name	Function Class
Gm70111	predicted gene, 70111	1250 bp downstream
Pcp4l1	Purkinje cell protein 4-like 1	Intron
Rr423238	regulatory region 423238	1791 bp distal