rs108065805 SNP Detail

Summary

• ID
  rs108065805
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164907301 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACACA CACACATACA CACACACACA
  C
  ACACACACAC ACACACACAC ACACA                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ
ss148234629	ENSMUSSNP5234786	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ
rs108065805					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164907301 () rs orientation: forward

Symbol	Name	Function Class
Cd40	CD40 antigen	within coordinates
Tssr21707	transcription start site region 21707	1812 bp downstream
Tssr21708	transcription start site region 21708	1218 bp downstream
Tssr21709	transcription start site region 21709	1176 bp downstream
Tssr21710	transcription start site region 21710	442 bp downstream
Tssr21711	transcription start site region 21711	379 bp downstream
Tssr21712	transcription start site region 21712	356 bp downstream
Tssr21713	transcription start site region 21713	320 bp upstream
Tssr21714	transcription start site region 21714	1278 bp upstream
Tssr21715	transcription start site region 21715	1324 bp upstream
Tssr21716	transcription start site region 21716	1378 bp upstream
Tssr21717	transcription start site region 21717	1465 bp upstream
Tssr21718	transcription start site region 21718	1511 bp upstream
Tssr21719	transcription start site region 21719	1602 bp upstream
Tssr21720	transcription start site region 21720	1805 bp upstream
Tssr21721	transcription start site region 21721	1848 bp upstream
Tssr27603	transcription start site region 27603	within coordinates