rs108070600 SNP Detail

Summary

• ID
  rs108070600
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:40152551 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTAAAGAA CTCAAGAAGT
  GGACTCCAGA AAATCAAATA ACCCCATTAA AAAATGGGGC TCAGAGCTAA ACAAAGAATT
  CTCTCCTGAG GAATACTGAA TGACTTAGAA GCACACGAAA AAATGTTAAT ATTCACTGGG
  GTAATGTAAA TCAAAATAAG CCCTGGTATT CTACCTCACA TCAGGCAGAA TGATTAAGAT
  S
  AAAAATTCTG GTGACAGCAG ATGCTGGGGA GGATATGCCG AAAGAGGAAC ACTCCTCCAT
  TTTTGGTGGG ATTGCAAGCT TGTCCAACCA CTCGGAAAAT CATTCTGGTT GTTTCTCAGG
  AAATTGGACA TAGTACTACC GGAGGATCCC ACAATACCTC TCCTGGGCAT ATATCCAGAA
  GATATTCCAA CACGTAAGAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325385425	CHEV_17_39978605	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs108070600					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:40152551 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9159	CpG island 9159	1327 bp proximal
Gm26917	predicted gene, 26917	1337 bp upstream
Tssr148051	transcription start site region 148051	1660 bp downstream
Tssr148052	transcription start site region 148052	1823 bp downstream
Tssr148053	transcription start site region 148053	1968 bp downstream